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Project-MONAI
MONAI Tutorials
It seems that in the majority of tutorials, the optimisation for loop is given explicitly. In relatively few places, the `SupervisedTrainer` is used, despite existing for this reason. I can...
(base) root@LAPTOP-C900652C:/deeplearning/covid_CT# cd /deeplearning/covid_CT ; /usr/bin/env /root/miniconda3/bin/python /root/.vscode-server/extensions/ms-python.python-2022.16.1/pythonFiles/lib/python/debugpy/adapter/../../debugpy/launcher 40267 -- /deeplearning/covid_CT/data_analyze.py 2022-10-16 19:58:22,197 - INFO - Expected md5 is None, skip md5 check for file Task09_Spleen.tar. 2022-10-16 19:58:22,198 - INFO...
CalledProcessError Traceback (most recent call last) File ~/miniconda3/lib/python3.9/site-packages/monai/apps/auto3dseg/bundle_gen.py:183, in BundleAlgo._run_cmd(self, cmd, devices_info) 182 ps_environ["CUDA_VISIBLE_DEVICES"] = devices_info --> 183 normal_out = subprocess.run(cmd.split(), env=ps_environ, check=True, capture_output=True) 184 logger.info(repr(normal_out).replace("\\n", "\n").replace("\\t", "\t")) File ~/miniconda3/lib/python3.9/subprocess.py:528,...
Fixes https://github.com/Project-MONAI/tutorials/issues/966 cc @yiheng-wang-nv ### Description 1. Add `competitions` directory and move `kaggle` sub-directory under it. Also create `MICCAI` sub-directory. 2. Add preprocessing notebooks to surgtoolloc competition folder ### Checks...
### Description This python script takes as input the outputs from the HoverNet network, with softmax applied to the nucleus_prediction and argmax applied to the type_prediction. It outputs an instance...
Hi, I am trying to run the "hello world" notebook example, however, I am getting an error after calling runner.run(). The issue seems to occur after the line 488 in...
Fixes # . ### Description This is an example highlighting the use of custom dataloaders for multi channel images. Multi channel images are very commonly used in healthcare, this example...
This ➡️ _ScaleIntensityRanged(keys=["image"], a_min=-87.0, a_max=199.0, b_min=0.0, b_max=1.0, clip=True) is for task07 where to find other 9 dataset intensity range? train_transforms = Compose( [ LoadImaged(keys=["image", "label"]), EnsureChannelFirstd(keys=["image", "label"]), Orientationd(keys=["image", "label"], axcodes="RAS"),...
``` [2022-10-02T01:11:31.866Z] Running ./auto3dseg/notebooks/auto3dseg_autorunner_ref_api.ipynb [2022-10-02T01:11:32.125Z] Checking PEP8 compliance... [2022-10-02T01:11:32.690Z] Running notebook... [2022-10-02T01:11:32.690Z] Before: [2022-10-02T01:11:32.690Z] "max_epochs = 2000\n", [2022-10-02T01:11:32.690Z] After: [2022-10-02T01:11:32.690Z] "max_epochs = 1\n", [2022-10-02T01:11:36.872Z] MONAI version: 1.0.0+22.gffaa791c [2022-10-02T01:11:36.872Z] Numpy version:...
