model-zoo

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logging configuration

3

> Currently, bundles usually leverage this line config to run with correct logging: > https://github.com/Project-MONAI/model-zoo/blob/dev/models/spleen_ct_segmentation/configs/logging.conf#L11 > Please show the recommendation change or how to update the existing bundles? > CC...

wyli

Add more function to the TensorRT conversion CI/CD test

3

**Is your feature request related to a problem? Please describe.** Currently the [CI/CD test](https://github.com/Project-MONAI/model-zoo/blob/a0f2c1e5ba2b8e1411e45b320af1352224ab54a4/ci/verify_tensorrt.py#L53 ) of TensorRT conversion only contains limited input parameters. And the test performs on a MONAI...

binliunls

Now in MONAI-core, required and optional properties of bundles are defined in: https://github.com/Project-MONAI/MONAI/blob/9d6ccce3d46d64b3ffe289349f50323bd0a1b6eb/monai/bundle/properties.py It would be easier to keep these content up-to-date with it.

yiheng-wang-nv

add dataset and display

2

Signed-off-by: kate-sann5100 Fixes # 717. ### Description Add 3d lower-pelvic registration model ### Status Work in progress ### Please ensure all the checkboxes: - [x] Codeformat tests passed locally by...

kate-sann5100

Bundles should handle zero validation input

3

**Is your feature request related to a problem? Please describe.** For both single gpu and multi-gpu training, if the validation input is empty or not enough (in case of multi-gpu...

SachidanandAlle

What's the correct segmentation label match the organ name in Wholebody ct segmentation pre-trained model?

2

Hi, I used to execute inference with Wholebody ct segmentation from monai model zoo. But after I finished the process the output image is NOT match the organ list (like...

ytl0623

using the original labels, instead of inverted transformed labels for evaluation

11

Currently quite a few bundles use the inverted version of preprocessed original labels as the reference during evaluation: https://github.com/Project-MONAI/model-zoo/blob/987f49fe9e0f20f047a2252c1ace38bd760cfb33/models/spleen_ct_segmentation/configs/evaluate.json#L12-L21 which is different from the approach taken in the tutorial using...

wyli

With the BundleWorkflow interface, we modified some bundles to use this new feature. For example: https://github.com/Project-MONAI/model-zoo/blob/dev/models/spleen_ct_segmentation/configs/multi_gpu_train.json However, follow up the discussion in: https://github.com/Project-MONAI/model-zoo/pull/369 users may meet DDP error when calling...

yiheng-wang-nv

Add Tumor Segmentation Foundation Model

3

We already have two foundation models for basic whole brain and whole body segmentation. 1. whole brain segmentation model (133 brain structures) for T1 MRI. 2. whol body segmentation model...

tangy5

Add self-supervised pre-training bundle

1

**Is your feature request related to a problem? Please describe.** There is growing interest in self-supervised pertaining. MONAI already supports this task in the tutorials https://github.com/Project-MONAI/tutorials/tree/main/self_supervised_pretraining It would be great...

holgerroth