model-zoo

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Update to use MONAI 1.3.1 ### Status **Ready/Work in progress/Hold** ### Please ensure all the checkboxes: - [x] Codeformat tests passed locally by running `./runtests.sh --codeformat`. - [ ] In-line...

KumoLiu

Training and inference on new data for lung nodule detection in ct

6

Hello, I followed the tutorial and model zoo readme to reproduce lung nodule detection on the lunal dataset but i find the bundle to be specific to this dataset. Is...

Thibescobar

remove outdated tests

1

Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Status **Ready/Work in progress/Hold** ### Please ensure all the checkboxes: - [x] Codeformat...

yiheng-wang-nv

So far, we do `check_properties` in unit tests, thus the outdated check functions like `_check_sub_section_necessary_key` can be removed.

yiheng-wang-nv

host/load pretrained weights for 3D resnet

12

**Is your feature request related to a problem? Please describe.** PR https://github.com/Project-MONAI/MONAI/pull/2253 implements a generic version of resnet for spatial 1/2/3D inputs. It'd be very useful for MONAI to provide...

wyli

Diffusion bundle support monai service

1

Add validate in train_autoencoder.json Use brats18 as data Fixes #544 . ### Description A few sentences describing the changes proposed in this pull request. ### Status **Ready/Work in progress/Hold** ###...

Can-Zhao

**Is your feature request related to a problem? Please describe.** For the diffusion bundle, `monai.apps.DecathlonDataset` is used by the generative bundles. https://github.com/Project-MONAI/model-zoo/blob/f9334c14dbd779898b4ec04ac2f72554b486a668/models/brats_mri_generative_diffusion/configs/train_autoencoder.json#L143 https://github.com/Project-MONAI/model-zoo/blob/f9334c14dbd779898b4ec04ac2f72554b486a668/models/brats_mri_axial_slices_generative_diffusion/configs/train_diffusion.json#L105 It provides some convenience (auto-downloading datasets), but...

mingxin-zheng

Auto Segmentation error in 'brats_segmentation_v0.3.3' model

25

**Describe the bug** [2022-11-22 10:24:37,281] [19036] [MainThread] [ERROR] (uvicorn.error:119) - Traceback (most recent call last): File "C:\Users\AA\AppData\Local\Programs\Python\Python39\lib\site-packages\starlette\routing.py", line 635, in lifespan async with self.lifespan_context(app): File "C:\Users\AA\AppData\Local\Programs\Python\Python39\lib\site-packages\starlette\routing.py", line 530, in __aenter__...

ulphypro

PRE-PROCESSING QUESTION ABOUT Wholebrainseg large unest segmentation

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I have followed the pre-processing scheme as indicated in the paper Huo et.all; and when executing inference the output is not as expected, so: **What is the order and steps...

vlopezgz

Update `wholeBody_ct_segmentation`

3

### Description While testing the lazy-resampling benchmark, I find that maybe there's room for improvement in the pre-processing. In this PR, I mainly update several places below: - Remove `NormalizeIntensityd`...

KumoLiu