Niksa Praljak

icon company PhD student at the University of Chicago icon location Chicago, IL icon location PhD Student at the University of Chicago

Results 4 issues of Niksa Praljak

Is 'n_training_epochs' working for parameteric UMAP?

I set `n_training_epochs` to `args.epochs`, where `args.epochs` is 1. Of course, I plan to change this after I complete the fast development. However, it appears that parameteric_umap.fit_transform() leads to 10...

Question: how can we do profile alignment using FAMSA?

I see that FAMSA allows for straightforward profile-profile alignment between MSAs using the following command: ```bash # profile-profile alignment without refining output ./famsa -refine_mode off ./test/adeno_fiber/upgma.no_refine.part1.fasta ./test/adeno_fiber/upgma.no_refine.part2.fasta pp.fasta ``` It...

Where can I find the expression values reported in the paper?

Awesome work! In figure 4 of the paper, the plot compares synthetic and designed nanobodies in terms of their expression levels (fluorescence AU). Where can I find the synthetic and...

Is it possible to use Tecan Fluent as backend?

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I enjoyed reading the peer-reviewer paper on pylabrobot! Question: I noticed that the wrapper is OS-agnostic and even robot-agnostic. It can even handle Tecan Evo as the backend. However, is...