Jordi
Jordi
I found a small lack of documentation and an unexpected result while adding data. I'm using an input in homogeneous CSV format, so all data is either empty or present...
I realized that a `uniq -g ` causes the output fields to be ordered as given in the command. That's different from other commands like `cut`, where you have to...
When processing Illumina >1.8 reads, the reads are marked as filtered out or not. This is known as chastity filter. Usually, those reads are taken away and not used, but...
I've been using bgzf methods for processing some BGZ files and I found some issues with them that could be adresses with not too much effort. My needs were to...
I have a dataset that contains some column which is just an ID represented as an integer. I'd like to treat this column as a categorical one, but it is...
I was trying to compile bash and it was failing. After some debugging, parallelism came as the possible cause of the issue. I tried to solve it by using `--sequential`,...
#### Is your feature request related to a problem? Please specify. Not really a problem, but a performance issue/enabler. I'm aiming at processing some bam files in a scatter-gather structure....
Usually, people will always run the command with the same set of options, like to hide a specific type of mount or set their own thresholds. It would be nice...
UMIs are mostly used to track single molecules and enables us to distinguish them amongst the different reads we got from an experiment. With them, we are able to not...
#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify. (run `samtools --version`) I found this to be happening from version 1.13 and newer. Working...