Jordi
Jordi
Ups, sorry @eboyden, I came to your issue and added my opinions, including feature removal, that were not on your original text. My fault :-/ I subscribe your last comment....
That could work, but it could also be cumbersome. On one side, you have to compare low and high boundaries. On the other, this can get lengthy when having multiple...
:-O You are right, that tag is supposed to contain a barcode. In that case, it would be good to complain to the user about malformed data rather than generate...
I'd love if you solve the issue by issuing a warning and passing whatever is in the field. But if you issue and error and refuse to process the buggy...
I have real data (that I probably cannot share and won't be as good as it could be for testing) and some idea on how to generate a sample set....
Just coming here to say that I'm suffering the same issue with pylance (which is based in pyright, if I'm not wrong). I can ignore the errors, but it would...
My current workflow uses umi_tools group as you describe. Alignment->Grouping->MarkingDuplicates. One of the points is that the naïve version of marking duplicates can lead to people using it without realizing...
@daviesrob I won't say it's a two pass process. You get all the reads for a position and, before deciding on the duplication status, you correct the barcode for that...
Really? :-(
So far, LGTM. But would it be too much work to get the whole stats struct? ``` struct stat { dev_t st_dev; /* ID of device containing file */ ino_t...