trackplot issues

Plot multiple tracks overlaid

Hi, is or would it be possible to overlay tracks in one graph as, say a "line plot"? Those plots can be helpful to compare, e.g. effects of a treatment...

dgoekbuget

enhancement

highlight is not continue

Hello , thank you for your reply. I still have another question. I plot a picture. I want to make there is not gap. How can I do this? Thank...

houruiyan

did not show transcription picture

1

Hello, Dr. I have another question. This is my code. I can make sure there is multiple isoforms. However, it does not display. Could you help me? Thank you! ```...

houruiyan

Collapsing transcripts..

4

Hi, thank you for developing these package. It is convenient. But I meet problems when I plot `bigWigs

houruiyan

Could not locate mysql.

4

Hi, I am trying to use trackplot, but it show the error below. I have installed mysql either by homebrew or conda. Neither can be detected. Can you please help...

chenggang108

Highlight color alpha differs between tracks

2

Hi @PoisonAlien , Thank you for this fantastic tool! I wanted to highlight a specific region of the track plot but it seems like the box color alpha value is...

SergioRodLla

Problem - Genomic Region Viewing Window

3

**Hi, thanks in advance for the help. I tried plotting some bigwig files, successfully creating a track plot with a not very wide viewing window:** ```r > loci_names SYMBOL LOCI...

BolisLab

Support IGV.js browser sessions

It shouldn't be hard to generate an [IGV browser session](https://github.com/igvteam/igv.js/wiki/Wig-Track) for bigWig files. It would be a nice addition to the existing functionalities. With `browser.toSVG()` command I belive it should...

PoisonAlien

enhancement

using a non-standard mouse genome build

4

Is there a way to pass in a non-custom genome build in the read_coldata() step ? My reads are aligned to a specific mouse strain genome but it is not...

jcm6t