Oncoplot gene bar sizes too small

[GACGAMA]

Describe the issue Can't customize gene size bars, which make them too small! Even if I try sepwd_genes and sepwd_samples, nothing changes. Setting sepwd_genes to negative values increase the bar sizes but does not increase the space between them!

Changing sepwd_genes to a high enough evel than normal, changes all bars, except the one for the last gene (which makes it ugly)

Command

pdf("Test.pdf", width = 10, height = 15)
oncoplot(maf = laml, top = 50, showTumorSampleBarcodes = TRUE,barcode_mar = 10,  gene_mar = 6, sepwd_genes = -0.5, fontSize	= 0.8)
dev.off() 

pdf("Test1.pdf", width = 10, height = 15)
oncoplot(maf = laml, top = 50, showTumorSampleBarcodes = TRUE,barcode_mar = 10,  gene_mar = 6, sepwd_genes = 5, fontSize	= 0.8)
dev.off() 

**Session info**
R version 4.2.0 Patched (2022-05-11 r82344 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22000)

Matrix products: default

locale:
[1] LC_COLLATE=Portuguese_Brazil.utf8  LC_CTYPE=Portuguese_Brazil.utf8    LC_MONETARY=Portuguese_Brazil.utf8 LC_NUMERIC=C                       LC_TIME=Portuguese_Brazil.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] biomaRt_2.52.0  maftools_2.12.0

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.8.3           lattice_0.20-45        prettyunits_1.1.1      png_0.1-7              Biostrings_2.64.0      assertthat_0.2.1       digest_0.6.29          utf8_1.2.2            
 [9] BiocFileCache_2.4.0    R6_2.5.1               GenomeInfoDb_1.32.2    stats4_4.2.0           RSQLite_2.2.14         httr_1.4.3             pillar_1.7.0           zlibbioc_1.42.0       
[17] rlang_1.0.2            progress_1.2.2         curl_4.3.2             data.table_1.14.2      blob_1.2.3             R.oo_1.24.0            S4Vectors_0.34.0       R.utils_2.11.0        
[25] Matrix_1.4-1           splines_4.2.0          stringr_1.4.0          RCurl_1.98-1.6         bit_4.0.4              compiler_4.2.0         pkgconfig_2.0.3        BiocGenerics_0.42.0   
[33] tidyselect_1.1.2       KEGGREST_1.36.0        tibble_3.1.7           GenomeInfoDbData_1.2.8 DNAcopy_1.70.0         IRanges_2.30.0         XML_3.99-0.9           fansi_1.0.3           
[41] crayon_1.5.1           dplyr_1.0.9            dbplyr_2.2.0           bitops_1.0-7           R.methodsS3_1.8.1      rappdirs_0.3.3         grid_4.2.0             lifecycle_1.0.1       
[49] DBI_1.1.2              magrittr_2.0.3         cli_3.3.0              stringi_1.7.6          cachem_1.0.6           XVector_0.36.0         xml2_1.3.3             ellipsis_0.3.2        
[57] filelock_1.0.2         generics_0.1.2         vctrs_0.4.1            RColorBrewer_1.1-3     tools_4.2.0            bit64_4.0.5            Biobase_2.56.0         glue_1.6.2            
[65] purrr_0.3.4            hms_1.1.1              fastmap_1.1.0          survival_3.3-1         AnnotationDbi_1.58.0   BiocManager_1.30.18    memoise_2.0.

(Its windows 11, maybe a bug for Rstudio...)

[PoisonAlien]

Hi, Unfortunately, I can not think of any workaround to increase the width of the rectangles :| It should also be noted that, with a large number of genes visualized, the segment size tends to decrease (similar to any heatmap).

[github-actions[bot]]

This issue is stale because it has been open for 60 days with no activity.

[github-actions[bot]]

This issue was closed because it has been inactive for 14 days since being marked as stale.