repel for plotOncodrive

[AlexanderPic]

Dear maftools-team, would it be possible to implement a repel argument in the plotOncodrive function for an easier visualisation?

Thanks a lot for this package and your help! Best, Alexander

[PoisonAlien]

Hi,

Plots are generated with base graphics and it is not very flexible for labeling. However, you can take the results from oncodrive and plot it with ggplot.

Using example dataset:

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
laml.sig <- oncodrive(maf = laml, AACol = 'Protein_Change', minMut = 5)

ggplot(data = laml.sig, aes(x = muts_in_clusters, y = -log10(fdr), label = Hugo_Symbol))+geom_point()+ggrepel::geom_text_repel()

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