extra space somaticInteractions

[xiw588]

Describe the issue A clear and concise description of what the issue is. There is extra space

Command Please post your commands and the output (errors or any unexpected output)

somaticInteractions(maf = maf, top = 30, pvalue = c(0.05, 0.1))

Session info Run sessionInfo() and post the output below

[PoisonAlien]

Hi, What does the output look like for these pairs?

For. ex:

laml.maf = system.file("extdata", "tcga_laml.maf.gz", package = "maftools") #MAF file
laml.clin = system.file('extdata', 'tcga_laml_annot.tsv', package = 'maftools') #clinical data
laml = read.maf(maf = laml.maf, clinicalData = laml.clin)

si = somaticInteractions(maf = laml)
si[pair %in% "KMT2C, ADAM6"] #or se[pair %in% "ADAM6, KMT2C"]

[github-actions[bot]]

This issue is stale because it has been open for 60 days with no activity.

[github-actions[bot]]

This issue was closed because it has been inactive for 14 days since being marked as stale.