Anand Mayakonda

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icon location Heidelberg icon location Cancer genomics and Bioinformatics.

Results 153 comments of Anand Mayakonda

mafCompare may yield biased results when comparing cohorts with unequal sample sizes due to absolute mutation count-based Fisher test

Hi, It does account for the [sample size](https://github.com/PoisonAlien/maftools/blob/master/R/mafCompare.R#L108). It's a 2x2 contingency matrix of mutated and non-mutated values (cohort size - mutated cases) from two cohorts.

The get_col_df function seems to have a bug in the 6th line

Hi, Thank you for the issue. Could you please post the original command and the error?

How to define colors for clinical features that use continuous values

Hi, Thanks for the issue. I am looking into it and I will update it soon.