Pierre Boyeau

[WIP] lvm-DE code

1

Fixes #1068 Here is the code we discussed for lvm-DE, an importance-sampling-based procedure for calibrated DE gene predictions. A parallel PR will be opened asap for the associated notebook introducing...

The current implementation of scANVI only computes the ELBO without relying on the cell states' knowledge for labeled examples (see [here](https://github.com/YosefLab/scvi-tools/blob/master/scvi/core/trainers/annotation.py#L200)). We should fix this behavior and treat labeled and...

ValueError: too many values to unpack

5

Good Morning Everyone, I am trying to run `python main.py --aae` I get the following error: ``` Traceback (most recent call last): File "main.py", line 104, in model = AAE(**MNIST_AAE_HYPERPARAMS)...

Missing :All Options" content in docs

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**Snakemake version** 8.0.1 **Describe the bug** The `command line interface` documentation provides no content for paragraph `All Options`. **Additional context** The documentation for previous snakemake versions included a complete list...