Phage-structure-geek

> When setting up a new PC to run AlphaFold locally, should I look for a GPU with more tensor cores or cuda cores? For example, are we better off...

Hi, When your mods are run on T1050, the size of the uniref90_hits.sto file increases from 75 MB to 1.16 GB. The size of the mgnify_hits.sto increases from 3.6 MB...

Hi, After some additional testing, this parallel implementation works very well. On short to medium-sized sequences the speedup of the complete run is up to 25%. Very impressive! Thank you...

Hi, it's me again. The fact that jackhmmer uses so few threads does not make sense at all. I have just started two jobs in parallel - a 660 residue-long...

Hi, Please read my second message where the problem is described in greater detail. Of course, I am telling jackhmmer to use more than 8 default threads. So far, I...

Hi grandrea, Sorry for my brash response. You probably cannot see my pre-original post, which is replaced with whatever we see in the thread now. My jackhmmer is complied with...

Hi, Here is my configuration: Component: Model - Quantity GPU: PNY Technologies RTX A5000 Graphics Card (24 GB) - 2 GPU: PNY Technologies RTX A6000 Graphics Card (48 GB) -...

> On Jan 17, 2023, at 6:15 PM, emirzakh ***@***.***> wrote: > > > @Phage-structure-geek Thank you very much! Do you ever experience overheating issues with the PNY GPUs or...

Hi @adalal78, Your configuration looks great. I do not think you need RAID 1 for the databases. RAID 1 is slower than no RAID (seek time is much longer) and...

Are both CPUs supported by ASUS Pro WS WRX80E? The Threadripper 39x and 59x is socket sTRX4, while the Threadripper Pro 39x and 59x is sWRX8, the socket on that...