Mllepnos

Results 3 comments of Mllepnos

Warning: as option --src-fasta-ref is missing it is impossible to infer which allele is the reference allele

@freeseek I am running into the same problem. Were you able to fix the problem or did you find out how to solve it? `bcftools +liftover --no-version -Ou GWAS.bcf --...

Warning: as option --src-fasta-ref is missing it is impossible to infer which allele is the reference allele

I have tried the development version, but the issue still persists. I checked my VCF file, and although it does not include a SNP at position 779047, I still receive...

Warning: as option --src-fasta-ref is missing it is impossible to infer which allele is the reference allele

@freeseek I have sent you an email with some of the positions that are causing the issue.