deepsignal2

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Running deepsignal2 on pod5 files

1

Hello, I have a question regarding the use of DeepSignal2 on the new version of nanopore sequencing. Since the sequencing data is no longer in the fast5 format, but in...

marketanykrynova

what is the difference between deepsignal2 and deepsignal-plant?

BeatrizFaustino

tombo preprocess error

7

Hi, I have followed the README and I obtained error after generating the .fastq file using guppy Basecall. This are the commands I used: ``` .../guppy_basecaller -i .../fast5_files/fast5_pass/barcode01/ -r -s...

ZabalaAitor

FloatingPointError: underflow encountered in exp

8

Hi, I am getting this error when ı type "tombo resquiggle singlefast5/ wholegenome.fasta --processes 10 --corrected-group RawGenomeCorrected_000 --basecall-group Basecall_1D_000 --overwrite" ı search on internet but couldnt get solution is there...

Fatihlrcfs

extract_feature.py`s option parameter

6

Dear Peng, I want to try to train your model, but in the extract -- feature file, I find the option -- Positions. I wonder if this is the minimap2...

YuYangmio

Transfert learning with deepsignal2 human mod

2

Hi Peng, I was wondering if it would be possible to load your human CpG model and push the training further my own data (other species). The idea would be...

pterzian