Peng Jia

I thinks it may be caused by the threshold, you can try to change the -f in msi command. You can also plot a scatter diagram to see if these...

@Nana7926 Thanks for your question! We have the baseline files of CRC,STAD and UCEC built by TCGA dataset. But, these baselines are just for GRCh38 aligned bam file. And I...

Thanks for your suggestion, we will fixed in next release!

You can download from the supplementary information of the paper.

Hi, it is binary code of the sequence. Here, we encode A, C, G, and T with binary number 00, 01, 10, and 11. If you have sequence GT, it...

@ranasats please set -l option when you use _**scan**_ and _**msi**_ module!

I think the output.prefix_germline contained msi sites that had germline mutations, while the output.prefix_somatic included the msi sites that had somatic mutations. Total_Number_of_Sites refers to the total number of sites...

Hi Bo @boyangzhao , I will provide more information about the output in Wiki. The MSI score is the third column(%) in the prefix file. Number_of_Somatic_Sites is this the number...

@ruolin I think so, but do you have any supporting evidence? And what about the supplementary alignment? Thanks!

@ruolin Thanks for your suggestions, I will check it and update in next release!