Peng Jia

Thanks for your response! My sample is diploid, I removed the record with missed GT, such as "./." or "./1", and it worked. Thanks again! Peng

@anoronh4 Sorry for the late reply. We just test the msisensor-pro with docker. It seems htslib is missed in the container, but I do not meet this in docker. I...

@sscien Sorry, I can not install singularity version in our HPC, but the conda and docker version is OK.

@iranmdl Thanks for your contributions！ I will test and update the dockerfile.

Did you give correct path of the bam file?

> Hi, > > MSISensor-pro did provide a large convenience to determine the MSI status for tumor-only samples by building the baseline of PON. > > According to our knowledge,...

> > Add scripts for user to determine the cuf-off of MSI-H and MSS/MSI-L ? > > Hi Pengjia, > Recently I have install MSIsenor-pro and run the tumor_normal.sh for...

> > > > Add scripts for user to determine the cuf-off of MSI-H and MSS/MSI-L ? > > > > > > > > > Hi Pengjia, > >...

Hi, sorry for late reply. MSIsensor-pro is not recommended for MSI detection with RNA-seq data now. But, we have developed a new software named [MSIsensor-RNA](https://github.com/xjtu-omics/msisensor-rna) for RNA expression data. You...

when you use docker version, you must use **-v** option in docker run to convert you local path to docker environment path, I will give you a small expamle. In...