PedroMilanezAlmeida

icon indicating a website link https://scholar.google.com/citations?user=t6ORw9cAAAAJ&hl=en

icon location curious data scientist with a special interest in single cells, oncology and the immune system

Results 12 comments of PedroMilanezAlmeida

Rolling out uwot's C++ code as a header-only library

```tumap``` is great 😅

Disk-based data

I believe glmGamPoi can handle DelayedArray out-of-the box, right? Would it be of interest to have at least the "v2 flavor" workflow compatible with DelayedArray?

bmcite donor details

It looks like it was from a single donor! Copy and paste from https://doi.org/10.1016/j.cell.2019.05.031 (highlight my own) ### Bone marrow mononuclear cells CITE-seq experiment Bone marrow mononuclear cells from **_a...

Error installing harmony in R

Good morning everyone :) I am having similar issues: ``` > library(devtools) Loading required package: usethis > install_github("immunogenomics/harmony") Downloading GitHub repo immunogenomics/harmony@HEAD checking DESCRIPTION meta-information ...f/mxk7z9d93s97hygvdgh66knh5tlp8z/T/Rtmp2NWN4D/remotes7f0e32126d68/immunogenomics-harmony-88b1e2a/DESCRIPTION’ ... Installing package into...

Error installing harmony in R

Thanks for your comment! All three comments above use R4 though, while you are on R3. Hope Harmony will get implemented in R4 as well.

GPU memory overflow (leak?) for large datasets

Any updates on this?

GPU memory overflow (leak?) for large datasets

@adamgayoso > I'm not sure this is still an issue, are you running into this issue @PedroMilanezAlmeida ? I am not currently running into this issue but need to make...

tiledb_put_metadata only saving first element of character vector

Yeah, I (kind of) see what you mean. Just found this as well: https://github.com/TileDB-Inc/TileDB-R/pull/168#issuecomment-689226600. `paste` with collapse seems a better solution rn.

tiledb_put_metadata only saving first element of character vector

> I will leave this open because this could do with added documentation. saw this too late, re-opened now

Add support for sparse matrices

Thanks for your quick reply! Sparse matrices are often used in R to represent large amounts of data that may contain a fair number of zeros, such as those derived...