Gemma

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ppavlidis

I've relocated the logic for creating, replacing and removing raw/processed vectors in `ExpressionExperimentDao` so that all the code that manipulates vectors can benefit from removal in batch. When deleting an...

arteymix

Could not order by factor: ExperimentalFactor Id=44646 Name=genotype Biomaterial count (16) does not equal the size of the reorganized biomaterial list (20). Check the experimental design for completeness/correctness

1

arteymix

Dataset show as "null" in the top diff. probes for subset analyses

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arteymix

Updating a publication does not work reliably

1

When updating or clearing a PubMed ID, the UI is quirky and does not always work. Related https://github.com/PavlidisLab/GemmaCuration/issues/378

arteymix

Error while indexing in Hibernate Search

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[Gemma - pool-280-thread-15 (2023-10-13 10:46:20,191)] ERROR ubic.gemma.core.job.executor.webapp.TaskRunningServiceImpl$1.onFailure(94) | org.springframework.orm.hibernate4.HibernateSystemException: Error while indexing in Hibernate Search (before transaction completion); nested exception is org.hibernate.HibernateException: Error while indexing in Hibernate Search (before transaction...

arteymix

Error while removing DEA

1

Looks like an attempt to remove an already removed DEA. This happens in a retry attempt, so it's possible the initial remove kind of worked? https://pavlidis-lab.slack.com/archives/C02LZHP6RB3/p1697231854829899

arteymix

Downloading all terms for a platform is very slow

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arteymix

Missing values not tolerated in design matrix for GSE186388

2

See https://github.com/PavlidisLab/GemmaCuration/issues/271

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