Patrick W. van Zalm

Hi Fengchao, Thanks for your prompt reply. I replaced use the msbooster as you suggested, which seemed to have done the trick. However, now I run into a new issue...

Sure, ill give updating a shot. MSbooster & philosopher do not work together right? 

Thanks, Ive just updated Philosopher to 4.1.1. but the issue persists. Ill just use peptideprophet for now. I'd love to try out MSbooster+percolator so please let me know if you'd...

I just finished running with PeptideProphet without any issue. I could try running percolator without MSBooster, that might point in the right direction? Let me know if youd like me...

Sure [log_2021-12-02_11-56-37.txt](https://github.com/Nesvilab/FragPipe/files/7643936/log_2021-12-02_11-56-37.txt)

Hi Felipe, I've just (tried) to share the files through Google Drive. I hope you got the mail. I just tried running without MSBooster, but with Percolator and this ran...

Sure. I believe I did add you too now.

Thanks for pointing it out. I just tried and for me it also worked. I must have mixed up some folders. Let me re-create the issue. Ill try to re-upload...

I have just reuploaded a .zip to our Gsuite and invited the both of you. Thank you, Patrick

Hi Felipe, Thanks a ton for looking into this. That is indeed strange... It is the exact same files as the (wrong) files I did upload initially. Ive also ran...