PatoUru
PatoUru
**Hi @Finesim97! I hope that you are very well!! I tried the first option:** (base) patricia@nzxt:/media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg$ mkdir -p metaerg/db/sqlite3 (base) patricia@nzxt:/media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg$ ln -s metaergdata/sqlite3/metaerg.db metaerg/db/sqlite3/metaerg.db **But it does not work...
> Hi, > This is the same problem described here: #5 > Just revert back to an older metaerg version by running this inside `/media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg/metaerg/`: > > ``` > git...
I done but.. I have a new error!! in line 63. DBI connect('dbname=/media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg/metaerg/bin/../db/sqlite3/metaerg.db','',...) failed: unable to open database file at /media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg/metaerg/bin/output_reports.pl line 63.
Hi @Finesim97, **Finally, after the modifications that you suggested me, I ran the script again:** $ perl /media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/Programas/MetaErg/metaerg/bin/metaerg.pl --dbdir /media/patricia/f21f0a48-f5fe-411d-bad9-a8c6b2348fe5/database/db_MetaEG/db --outdir output-RH_29 --prefix RH_29 --cpus 20 RH_29_FINAL.fa **And I had...
Hi @Finesim97, **I hope you had a great weekend! This are the results:** /MO_RH_AMX/CFX_genomes/ESOM2/MetaErg$ **grep -P "\t.+_\d+SrRNA\t" output-RH_29/data/all.gff** # Should have output NODE_1009_length_4371_cov_1.12506:GC=0.535:length=4371 rRNAFinder.pl bac_5SrRNA 4304 4371 . - ....