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                                            PathogeNish

Support for GTDB taxonomy?

Hi @cdiener, just to confirm, the agora201_gtdb207_genus_1.qza file is a genus level aggregation of the agora2 (7000+ strain) model database using GTDB nomenclature?

Hi @cdiener, I downloaded the raw sequence (WMGS) data from the micom paper GitHub and ran classification using MetaPhlAn4. I then considered two separate specific cases: 1. Chocophlan taxonomy. 2....

Analyse sample growth on multiple media (multi threading)

Hi @cdiener. This is interesting! I didn't know one could give specific tags to media as well! Yeah... the process is quite lossy because one is forced to create multiple...