Parul Kudtarkar

Hi I am having error with installation on ubuntu 14.04 ec2 instance, node is v10.13.0 and npm is 6.4.1 npm ERR! [email protected] postinstall: `node install.js` npm ERR! Exit status 1...

community contributed plugin track

8

Hi! How easy/seamless is it to add community contributed plugin track? Are there any examples/demonstrations available? Thanks, Parul

Assign donor ids to actual donor

2

Hi, do we have a method to assign the actual donor IDs (e.g. SAMNXXX or whatnot) to the donor 0/1/2/etc. assignments from Vireo? This is when we have donor genotype....

assignments between snRNA and snATAC

3

We have snRNA & snATAC from pooled samples on which we ran vireo; is there a way to determine how consistent the assignments are btw RNA and ATAC? Thanks you!

Vireo without Genotype (N=3) - high unassigned cells

2

Hi @huangyh09, Thank you for creating vireo & cellsnp-lite - it is my to go software for demultiplexing!! We have multiomic sequencing (shallow) 1. for scRNA 3320 mean raw reads...