Parsoa Khorsand

Can you guys provide an update on the status of csa_sada's thread safety? I've been playing with it lately and the data structure seems to be locked when multiple threads...

Did more investigation and turns out something else was the source of problem. My bad. Please delete this if necessary. Thanks.

Any update on this? Thanks.

Thanks for your response. I didn't know about the `convertAllele` bit. Now after running that the events are properly categorized but the genotyping step still fails to produce meaningful genotypes...

I'm not doing any filtering on the reads or kmers, however I generally don't expect these breakpoints to be exact to the basepair. I tried rerunning with the above flags...

Thanks for your time! The new results are [here](https://gist.github.com/Parsoa/6ec3545d3222ec4f41a1bd1c36289eb1). Btw I combined the previous events with the prior events and genotyped the whole set, but now I'm only getting ~1500...

Here is the stdout for the clustering and genotyping stages: ``` [01/06/2020 01:21:38] You are using BayesTyper (v1.5) [01/06/2020 01:21:38] Seeding pseudo-random number generator with 1590999698 ... [01/06/2020 01:21:38] Setting...

I tried with the `hg19_selected_VNTRs_Pacbio.db ` too but I still get the same error (anyway I'm not sure if this would have worked as my sample is mapped th hg38)....

The first error (narrowing conversion) should be fixed with the latest commit. If the compiler can't find your zlib then the headers are not in the search path. You can...

Sorry for my late response. I'm glad you could fix the issue. As for your cluster, you should contact your admin and make sure they have all the libraries required...