pbbioconda icon indicating copy to clipboard operation
pbbioconda copied to clipboard

Published 20 hours ago • verified publisher icon PacificBiosciences

dedup

Open marcus-tutert opened this issue 10 months ago • 0 comments

Hi,

I am just wondering what is the approximate run time for the dedup algorithim?

I am running on 20 cores each with 50GB of ram and trying to deduplicate a bam file thats ~50GB in size but its been running for >8 hours and only outputted a file ~2GB in size so far.

Is there way to check logs of progress on this step?

Thanks!

marcus-tutert avatar Mar 31 '24 16:03 marcus-tutert