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Is this tool available for ONT data?

Open dnarna2108 opened this issue 1 year ago • 1 comments

Hi,

I'm wondering if I can analyze ONT sequencing data using RepeatAnalysisTools.

I'm planning to generate a waterfall plot of the mapped reads.

I also have a consensus sequence (*.fa) file for the repeat expansion and normal allele.

Thank you.

dnarna2108 avatar Jan 03 '24 03:01 dnarna2108

as this is largely been deprecated and there are no specific blocks to using anything other than PacBio data, I don't think this would be an issue for anyone. use at your own risk :)

jrharting avatar Jan 03 '24 19:01 jrharting