FALCON
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how to get the data for the examples
I tried to use git-sym, e.g.,
root@bio:/falcon/FALCON-integrate/FALCON-examples# git-sym update ./run/ecoli/data
-> in dir './run/ecoli/data'
<- back to dir '/falcon/FALCON-integrate/FALCON-examples'
symlink: 'run/ecoli/data/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads'
'run/ecoli/data/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads' -> '../../../.git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0' does not exist
-> in dir '/falcon/FALCON-integrate/.git/modules/FALCON-examples/git-sym-local/links'
-> in dir '/falcon/FALCON-integrate/.git/modules/FALCON-examples/git-sym-local/cache'
make -j -f /falcon/FALCON-integrate/FALCON-examples/git-sym.makefile 'ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0'
curl -L https://downloads.pacbcloud.com/public/data/git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads.tar | tar xvf -
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 242M 0 0 0 0 0 0 --:--:-- 0:00:17 --:--:-- 0ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0/
ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0/subreads.1.dexta
0 242M 0 98304 0 0 530 0 5d 13h 0:03:05 5d 13h 0^C/falcon/FALCON-integrate/FALCON-examples/git-sym.makefile:29: recipe for target 'ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0' failed
make: *** [ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0] Interrupt
However, the speed is so slow. Then I tried to use some download tool to get the data directly from https://downloads.pacbcloud.com/public/data/git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads.tar . The speed is slow, too.
Is there any other way to download the data? Thanks.
That site might have been affected recently, as we changed buildings physically. Try again. If it's still slow, I will contact IT.
Is there any other way to share and download these files? I found that it is very difficult to keep the download connection in China. Only synth0 and greg200k can be download successfully.