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how to get the data for the examples

Open fangvv opened this issue 8 years ago • 2 comments

I tried to use git-sym, e.g.,

root@bio:/falcon/FALCON-integrate/FALCON-examples# git-sym update ./run/ecoli/data
-> in dir './run/ecoli/data'
<- back to dir '/falcon/FALCON-integrate/FALCON-examples'
symlink: 'run/ecoli/data/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads'
'run/ecoli/data/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads' -> '../../../.git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0' does not exist
-> in dir '/falcon/FALCON-integrate/.git/modules/FALCON-examples/git-sym-local/links'
-> in dir '/falcon/FALCON-integrate/.git/modules/FALCON-examples/git-sym-local/cache'
make -j  -f /falcon/FALCON-integrate/FALCON-examples/git-sym.makefile 'ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0'
curl -L https://downloads.pacbcloud.com/public/data/git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads.tar | tar xvf -
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0  242M    0     0    0     0      0      0 --:--:--  0:00:17 --:--:--     0ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0/
ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0/subreads.1.dexta
  0  242M    0 98304    0     0    530      0   5d 13h  0:03:05   5d 13h     0^C/falcon/FALCON-integrate/FALCON-examples/git-sym.makefile:29: recipe for target 'ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0' failed
make: *** [ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0] Interrupt

However, the speed is so slow. Then I tried to use some download tool to get the data directly from https://downloads.pacbcloud.com/public/data/git-sym/ecoli.m140913_050931_42139_c100713652400000001823152404301535_s1_p0.subreads.tar . The speed is slow, too.

Is there any other way to download the data? Thanks.

fangvv avatar Jan 14 '17 07:01 fangvv

That site might have been affected recently, as we changed buildings physically. Try again. If it's still slow, I will contact IT.

pb-cdunn avatar Jan 16 '17 16:01 pb-cdunn

Is there any other way to share and download these files? I found that it is very difficult to keep the download connection in China. Only synth0 and greg200k can be download successfully.

fangvv avatar Jan 17 '17 08:01 fangvv