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Nomenclature of FALCON contigs

Open dcopetti opened this issue 7 years ago • 1 comments

Hi, I am analyzing the p- and a-contigs of a FALCON assembly, and within the p-contigs I see that there are canonical linear contigs (e.g. 003655F), circular contigs (3702) and linear "R" contigs (002733R). What are the latter ones? Are there other codes we should expect? Assembling plant genomes (>200 Mb, linear chromosomes) is there a reason to keep circular or R contigs 10-50 kb long? (unless they may be organelles of course) Thanks

dcopetti avatar Jul 31 '17 10:07 dcopetti