Peera Hemarajata

vcf-vcf intersect error

5

Hi, I ran into this error during the ARTIC workflow: index file localref.fa.fai not found, generating... /Users/peerahemarajata/galaxy/database/jobs_directory/000/137/tool_script.sh: line 25: 48088 Segmentation fault: 11 vcfintersect -v -r 'localref.fa' -w "0" -i...

Missing contents in database/dependencies

2

Hi, I am running a Docker image with SNVPhyl (https://snvphyl.readthedocs.io/en/latest/install/docker/) on a MacOS High Sierra. I noticed that all shed tools with dependencies would appear "installed" but when checking the...

Updating databases in Galaxy

20

Hi, I was wondering how I can update the databases used by the tool in Galaxy. Thank you!