JAFFA
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Oshlack
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Hi, Using JAFFA v2.2. I run JAFFAL and get a several fusion transcripts reported as expected. In order to test what happens if no fusion transcripts are identified, I removed...
Dear JAFFA Developers, during the last couple of days I tried to solve an issue I'm experiencing running JAFFA (direct mode). Since I'm writing here, I've not been able to...
Hi, I'm currently using JAFFAL on Linux with no issues. It's not working for me on Mac with an M1 chip. It looks an issue with bpipe, and I have...
Hi, I encountered a minor issue when I ran JAFFA direct with the following parameters: `JAFFA/tools/bin/bpipe run -n 15 -p outputName=5360r_jaffa_results -p jaffa_output=jaffa/` The pipeline was interrupted because the "jaffa_results.fasta"...
Thanks alot for the apprecitated tool I have applied JAFFAL for a single cell long read nanopre data and it works nicely in both the healthy and mutation pairing samples....
Dear JAFFA(L) team, Thank you for providing the JAFFA(L) resources for hg38 and genCode22 at https://figshare.com/ndownloader/files/25410494 I wonder whether you could periodically provide updated versions of the resources, e.g. based...
Hi! I'm using JAFFAL with ONT data, i'm writing because i'm interested in getting the sequences of the spanning reads supporting a gene fusion (or the IDs, so i can...
