Orson

icon location PERU icon location Hi. I am Orson. I am studied a master bioinforamtics at National University in Colombia. I have experience in metagenomics and genomic

Results 3 issues of Orson

Files shape file

Hi. Please, you recomend any web for obtain the files shp and others for different countries. In my case a search Peru. Thanks ..

Work with 1000 genomes

1 comment

Dear team parsnp I have a directory with **1320 assemblies genomes**. I run the command parsnp -g ../../DB_all/genome_reference_VP/CP007004.gbk,../../DB_all/genome_reference_VP/CP007005.gbk -d ../../Data/all_v_p_for_parsnp/ -p 6 **It works well but only aligment 73 genomes.**...

Problem in rarefy.py

5 comment

Hi team ecopy I used the function $ ep.rarefy(data.frame, 'rarefy') and it return me the error: ecopy/diversity/rarefy.py:137: RuntimeWarning: invalid value encountered in divide rare_calc = np.sum(1 - comb(diff, size)/comb(N, size))...