pyopenms-docs
pyopenms-docs copied to clipboard
OpenMS
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
**Describe the problem you encountered** The action should trigger on every (forced) push to master+ipynb but does not! Probably due to Gihub's measures to prevent infinite triggers between actions. This...
On the website and or pyopenms docs. Without the need for manual intervention. E.g. put a version file somewhere and both the CI and the docs parse this.
**Context: this is some text and images from an older lecture we gave. Maybe something can be reused.** Chemical properties of metabolites The metabolism is the sum of all chemical...
When reading the documentation, I couldn't find anything about Ionic Mobility. I got mzML data that I would like to load but the "classic/documentation" approach: ```python from pyopenms import MSExperiment,...
should be simple with # wrap-as push_back seems to confuse pure python users
see e.g. https://github.com/OpenMS/OpenMS/commit/4e41abd4a49052549aa9f4547fb8ed1bd534b14d Where `in_` would lead to invalid target errors. This needs to be done in all "*.pyx" files in the OpenMS/OpenMS repository. Not sure if there are more...
Maybe in a colored box e.g. something like In this section, you will learn: - how to load, process and store mass spectra and chromatograms - how to plot spectra
Hi! There exists some errors when I run the last part of Untargeted Metabolomics Pre-Processing Chapter in Python3.10 or Python3.11 with PyOpenMS 3.1.0. Could you tell me how to resolve...
OpenSWATH provides a lot of low-level but highly useful chromatogram processing algorithms, but they are currently very hidden from python users. It would be great to add those to the...