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Published 20 hours ago • verified publisher icon OpenHero
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G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

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Compilation error

I'm using the latest version (https://github.com/OpenHero/gblastn/commit/f31125a18a0b7b42591404954657972f67c74f67) of gblastn and followed the README: First I did: `configure --without-debug --with-mt --without-sybase --without-fastcgi --without-sssdb --without-sss --without-geo --without-sp --without-orbacus --without-boost` The configure step ended...

ITS-Marcelo avatar ITS-Marcelo

CUDA error at gpu_blastn_MB_and_smallNa.cu:1903

I got the following error when I tried gblastn:: ``` CUDA error at gpu_blastn_MB_and_smallNa.cu:1903 code=11(cudaErrorInvalidValue) "cudaMemcpy(offset_pairs, p_scanMultiDBAuxWrap->offsetPairs, exact_hits_num* sizeof(BlastOffsetPair), cudaMemcpyDeviceToHost)" ``` However, the error message is not informative enough for...

mkasa avatar mkasa

Does not output to stdout

When -out is not specified, the original NCBI-BLAST outputs to the standard output, but it seems that gblastn does not output anything when -out is not specified, making it difficult...

mkasa avatar mkasa

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verified publisher icon OpenHero

Metadata

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

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