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cannot demultiplex

Open dridk opened this issue 4 years ago • 0 comments

Hi, I don't understand what is wrong ...

I have a fastq file with the following sequences. (My barcode is under bracket):

@MN00591:192:000H332YK:1:11102:20930:2477 1:N:0:1
GCCCCCAAAATCAGCGAAATGGGCGCCATTGGTGATGACACCAGGCATCAGAATAAATGTTGTCGGCGAGATATTTGTCGGTCCCAGACTTTCGCTGAACGGCCACGGAGATAGGGCTAGGAGTAACCAGAATGGAGAACGC  [ATATCATTAACAGAG]  GGTACGCTCATCAGAATTAACC
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

My barcode file contains the barcode :

#filename,#index1,#index2
A11,ATATCATTAACAGAG,  
H10,ATTAATAGTGGTATG,

But the following command keep creating 0 bytes files.

defq -i file.fastq -o demux_out_dir -s index.csv -f .fastq -z 1

dridk avatar May 15 '20 17:05 dridk