GeneFuse
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Whether the software supports fastq data from both DNAseq and RNAseq or not?
Can I use this soft to call fusion gene from RNAseq data? Could anyone give me some advice?
thanks so much !
This tool is originally designed for detecting fusion from DNA-Seq data.
Theoretically it can be used for detecting fusion from short reads (Illumina / Lifetech etc) RNA-Seq data. But I haven't done a lot of testing.
False negative may happen in such case: the fused exon is too short, and its neighbour intron is too long.
For long reads RNA-Seq (PacBio / Nanopore etc) RNA-Seq data, please use other tools.