error when creating fusion.csv file

[ericavalentini]

Hi,

I am trying to create the fusion.csv file using the script that you provide gen_fusion_file.jl but I get the error:

loading gencode grch38
ERROR: LoadError: KeyError: key "localfile" not found

And this is what I run: julia scripts/gen_fusion_file.jl -r GRch38 -g genes_for_csv.txt -f fusion.csv

Thanks a lot,

Erica

[sfchen]

What genes do you want? I can create this CSV file for you.

[ericavalentini]

genes_for_csv.txt Thanks a lot, this would be my list.

Best,

Erica

[sfchen]

Here you are.

erica.hg38.csv.zip