dance

dance copied to clipboard

Complete the automl task about celltype_annotation. Currently, for each celltype annotation algorithm task, a data set is arbitrarily selected for a full set run. Due to the merge time problem,...

xingzhongyu

Tutorial notebook is outdated

1

The official tutorial is not compatible with v1.0 release. Please refer to the issue [here](https://github.com/OmicsML/dance-tutorials/issues/2#issue-2211237029).

wehos

Errors with Installation

2

https://github.com/OmicsML/dance/blob/1d94be91625a352ad8510c16d5d23b9ce5e02b53/install.sh#L58 ~~`torchvision=` should be replaced with `torchvision==`, otherwise 'install.sh' raises error~~ Fixed by [latest PR](https://github.com/OmicsML/dance/pull/433)

wehos

RemyLau

RemyLau

build(deps): bump igraph from 0.10.8 to 0.11.3

7

Bumps [igraph](https://github.com/igraph/python-igraph) from 0.10.8 to 0.11.3. Release notes Sourced from igraph's releases. igraph 0.11.3 Added Added Graph.__invalidate_cache() for debugging and benchmarking purposes. Changed The C core of igraph was updated...

dependabot[bot]

When running the tuning examples recently introduced in #398 (and #406), there appears to be some random chance of having `segfault`. The issue was later observed to be machine specific....

RemyLau

add_transform_test

4

add CellTypeNums SC3Feature RESEPTGraph TangramFeature test Changed local github repository. So I will pre-commit install next time The code of the automl demo is a bit irregular. I will continue...

xingzhongyu

I work in an HPC environment where conda installation is not possible, pip installation results in a `ModuleNotFoundError` for dance.metadata. The directory appears to be missing its `__init__.py` file. Cloning...

cwilson51

Some questions about general wrapper for datasets

8

Hi, I intend to apply this model to different datasets rather than the competition datasets, and I wonder if you have any general loading data structure to load public datasets...

HelloWorldLTY