Olsennnnn

Hi, While running `perl vcf2maf.pl --input-vcf newtest.vcf --output-maf test.vep.maf --vep-path /home/data/my/miniconda3/envs/vep/bin/ --vep-data /home/data/my/homo_sapiens/93_GRCh38/ --ref-fasta /home/data/my/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz --ncbi-build GRCh38 --vep-forks 1`, I got a lot of warnings, like`WARNING: Couldn't retrieve bps around...

Running trinucleotideMatrix generates Error in.Call2

10

Hi, While running, I got a mistake, like` ```r laml.tnm = trinucleotideMatrix(maf = maf,ref_genome = "BSgenome.Hsapiens.UCSC.hg38") -Extracting 5' and 3' adjacent bases Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord,...

Error:long vectors not supported yet: memory.c:3940

1

Hi, While running this `laml.tnm = trinucleotideMatrix(maf = combined_maf, prefix = 'chr', add = TRUE, ref_genome = "BSgenome.Hsapiens.UCSC.hg18")` , I got a mistake, like ``` Warning in trinucleotideMatrix(maf = combined_maf,...

Hi, I want to convert the vcf file to the maf file, but an error occurs when I run the following code:`perl vcf2maf.pl --input-vcf 10084_10084.vcf --output-maf 10084_10084.maf --vep-path /home/data/t230420/miniconda3/envs/vep/bin --vep-data...