Olena Maiakovska

Dear authors, When I run the example provided by executing samplot-ml: `snakemake -s samplot-ml-predict.smk -j 6 --use-conda --conda-frontend mamba` I get the following: ``` Building DAG of jobs... Your conda...

It looks like there is a typo in your command in Example usage, step 8. The --conda-fronend option should be --conda-frontend.

igv/sample.xml file writes wrong reference genome (37 instead of 38)

2

Hi all, I run into issue of xml file generation with wrong reference genome. When I submit the run using command: input_path=/input_dir/ refdata_path=$PWD/clinsv/refdata-b38 project_folder=$PWD/449_WT docker run -v $refdata_path:/app/ref-data -v $project_folder:/app/project_folder...

exist status: 256 run on cnvnator stage

1

Hi all, I am running test dataset based on refdata-b38 and got the following error: "error exist status != 0 (256), please check /app/project_folder/SVs/FR05812606/cnvnator/sh/cnvnator.caller.FR05812606.e for more information". The error file...