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Hi Chris, I have the same problem. I'm running this file in Docker installed in my Ubuntu 18.04 OS. here is the command I used: root@84409dacfe33:/home# /home/src/scripts/MITObim.pl -sample AcspLA -ref...

Hello Cristoph, I'm triying to apply your reply to my data but I dont know what i'm doing wrong. 1: My data is located here (seed and fastq files): /home/oscar/Lachesillidae/MITOrecons...

I Christoph, Already working, everything is running O.K. Thanks

Hi @tomaskopsa could you please let me know the command you used to sort with FASTQ-sort? I'm working with WGS read mapping and several of my raw reads present the...