Oberon Dixon-Luinenburg

icon location PhD candidate in Bioengineering and Computational Biology at UC Berkeley Co-advised by Aaron Streets and Nilah Ioannidis

Results 6 comments of Oberon Dixon-Luinenburg

Recommended way to include modkit as a dependency for a multi-platform python package

We want a workable prototype to distribute asap, but I'll keep an eye out for the python wrappers. I didn't find that conda package version when searching the git repo...

Recommended way to include modkit as a dependency for a multi-platform python package

Thanks for the clarifications. My latest testing has all been with v0.2.4. I suspect the writing-to-disk limitation is a big factor in my `extract` speed issues; my old code writing...

Request: additional output columns for extract

@ArtRand just checking in on this - I'm doing more software package dev work this month and it could be good to test this change.

Request: additional output columns for extract

Hi @ArtRand, it's been a while since I've checked back on this but I do not believe this feature is currently implemented. Let me know if you can make a...

Request: additional output columns for extract

Hi @ArtRand, I tested it out and I think these new columns do exactly what I need! When can these get into a conda release so I can include them...

Shuffle order is the same across runs when using strategy='ddp'

I am having a similar problem. I am using lightning 2.4.0 and a LightningDataModule that wraps a custom pytorch Dataset. I have verified that my LightningDataModule, when initialized outside a...