Mary O'Neill issues

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Results 4 issues of


                                            Mary O'Neill

Install macOS Monterey (M1, arm64)

I'm wondering if you plan to release a version of Roary on bioconda that is compatible with the osx-arm64? Thanks!

Compatibility with non 10X/Cell Ranger single cell data

Hello, I'm wondering if SoupOrCell can be used with home-brew single-cell data not produced on the 10X Genomics platform and processed through CellRanger? What steps would need to be done...

Feature Request: TPM from Stringtie

Feature request: StringTie is now calculating TPM but as far as I can tell the ballgown (Tablemaker) function does not have the option to import this data.

feature request: manually adjust max value in plotMeans legend

The ability to adjust the legend scale would be a great feature!