Lucas Reber

Colabfold_batch connects to mmseqs server despite msa input

19

## Expected Behavior I want to create msas for a batch of heterodimers using colabfold_search and predict the structure for the msas using colabfold_batch without using the mmseqs server for...

Local generation of .m8 file causes wrong template selection in colabfold_batch

5

## Expected Behavior This is my input.csv file: ``` id,sequence heterodimer_2,MAAEAWRSRFRERVVEAAERWESVGESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGELVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGKDARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAVGARQDVSGAN:MDAAVAGQHARRRIRPPEPLVMAGSPSTPAAFRCPISLEVMRSPVSLPTGATYDRASIQRWLDTGHRTCPATRLPLASTDLVPNLLLRRLIHLHAATLPPSPSPEVVLSQLAAAGGEPAAAEKAVRSLAAKIAPEKGKRASVASAVAADLDSAVPALLSFAKGGAGADARVDAVRILATVAPELVPYLTGDGTEKRGRVRMAVEALAAVLSADGVGEDTKEGLIAALVAGDLGHIVNTLIAAGANGVMVLETILTSPVPDADAKTAIADRSELFPDLVRILKDAASPAAIRCMAAAVQVRGRPARSSMVRAGAIPALALAVAAAPTAVAESALGLLVEAARCTDGKAAIGADAAEVAAAVMGRMIRVGPAGREFAVAVLWLSCCAGGGDRRMREAVASAPEAVGKLLVVMQGDCSPSTSRMAGELLRAVRMEQERKGLAAAYDSRTIHVMPY ``` Running `colabfold_batch --templates --amber --use-gpu-relax input.csv output` yields the following .m8 file and template_domain_names.json file: First 10 lines...