Noralii

Error in degree(dp_mst, v = parent_node_name) : unused argument (v = parent_node_name)

1

When I run ordercell，Error in degree(dp_mst, v = parent_node_name) : unused argument (v = parent_node_name)，how can I solve it?

Error in .extract_coord(x = x, slice = slice, img = img) : !is.null(colnames(x)) is not TRUE

1

plotSpatialScatterpie( x = spe, y = mat, cell_types = colnames(mat), img = FALSE, scatterpie_alpha = 1, pie_scale = 0.4) + scale_fill_manual( values = pal, breaks = names(pal)) Error in .extract_coord(x...

plot_density(data_combined, "EPCAM") Error in as.vector(x, "character") : cannot coerce type 'environment' to vector of type 'character'

Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length

12

data_combined

data_combined %% RunPCA(object = ., features = VariableFeatures(object = .)) %>% #nolint RunFastMNN(object = ., object.list = SplitObject(., split.by = "sampleid")) Computing 2000 integration features Warning: Layer counts isn't present...

Error in get(x, envir = ns, inherits = FALSE) : object 'gson_cpd' not found

4

devtools::install_github("junjunlab/GseaVis") Error in get(x, envir = ns, inherits = FALSE) : object 'gson_cpd' not found