NiKo LiChi

I found a way!! After using the `upset` command, you can use the `grid.text` from the package grid. In my case I used like this: `grid.text("My_Title",x = 0.65, y=0.95, gp=gpar(fontsize=20))`

A small add-on: when using the `--normalize` option instead of `--phred`, the code works well. Please see figure  Would you recommend the phred or the normalized option to check...

Yes, everything is normal see the attached figure. Do you have any suggestions on the phred or the normalized option to check technical replicates? 

Hi Wouter, I was checking the files again and discovered that what I thought was black is actually a high saturation. I meant, if you make Zoom on the image...

This is great! Thanks, Wouter.

Hello there, I made some progress with a different approach but bambu is still failing in the same issue. I divided the data in 3 batches to obtain the extended...

Hi @cying111, Thanks for your reply. I did two tests with the new installation. 1. Bambu annotation with all samples at once. 2. Bambu merging RDS annotation from 3 batches....

Hi @cying111, Alright, after 1day and 13hours running this is the issue that both of my jobs/approaches are presenting: ``` --- Start extending annotations --- Error in `[.data.table`(startEndDt, combinedFeatureTibble[, .(intronStarts,...

Hi @cying111, Sorry for not getting to you sooner. I was doing many tests and they took quite some time. First of all, the current patch does not show the...

Hi @cying111, Thank you very much for your input and the details in the commands. It seems I can speed up the process a bit more with your comments! >...