NikicaJEa

SaveSeuratRds: Cannot find any of the layer files specified

9

Hi. I am experiencing multiple issues with SaveSeuratRds. When using SaveSeuratRds everything looks fine, the function is not complaining. But when I load the same saved object with LoadSeuratRds I...

seuratv5 dimplot color transparency issue

1

Hi. I noticed that the V5 DimPlot function does not color the dots as specified. For example if I do: ```r DimPlot(cells, group.by = "plot_id",raster = F, cols = c("grey"...

Immune_All_Low - model training question

4

Hi I was trying to replicate your Immune_All_Low model by using the same training dataset that you kindly provided (CellTypist_Immune_Reference_v2_count). I tested the two models (original and the replicate) on...

RuntimeError: Expected is_sm90 || is_sm8x || is_sm75 to be true, but got false.

7

Hi. I managed to successfully install scGPT. However, when I actually try to run some of the fine-tuning code I get an error associated with flash_attn_cuda: ``` ---> 21 softmax_lse,...