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                                            Niolo9

Guidance on abundance.tsv file and output

Hi and thank you for your quick reply. Your calculations are also what I expected to happen. When I use grep -c on my readmappings.tsv file, I find this file...

Guidance on abundance.tsv file and output

wgsim, so error free simulation. Could this cause the behaviour?

Guidance on abundance.tsv file and output

sure!

Guidance on abundance.tsv file and output

Hi again, I ran the simulation again with: readsim=tools/art_illumina-2.3.6/art_illumina error_profiles=tools/art_illumina-2.3.6/profiles samtools=tools/samtools-1.3/samtools profile=mbarc size=0.1 type=art fragments_size_mean=270 fragment_size_standard_deviation=27 This resulted in: | grep -c % | grep -c count | expected --...