NicoleYY77

'curl: (77) error setting certificate verify locations' error message when trying to download Basenji2 training data

2

I'm working on MacOS Big Sur and trying to download data from gs:// but run into error message: `curl https://storage.googleapis.com/basenji_barnyard/data/human/statistics.json curl: (77) error setting certificate verify locations: CAfile: /etc/ssl/certs/ca-bundle.crt CApath:...

ValueError("Error counting BAM file: count <= 0") ValueError: Error counting BAM file: count <= 0 when trying to replicate the ABC score results of K562

3

Hi, I'm trying to use the public data as mentioned in the supplementary file: H3K27ac-ChIP: ENCFF384ZZM and DHS: wgEncodeUwDnaseK562AlnRep1.bam, wgEncodeUwDnaseK562AlnRep2.bam. And I also change the reference file to hg19 before...

Difference between EnhancerPredictionsFull_threshold0.02_self_promoter.tsv and EnhancerPredictions_threshold0.02_self_promoter.tsv

3

Hi, I have some issues with interpreting the output files of prediction: there are EnhancerPredictionsAllPutative.tsv, EnhancerPredictionsFull_threshold0.02_self_promoter.tsv, and EnhancerPredictions_threshold0.02_self_promoter.tsv. I initially thought EnhancerPredictionsFull_threshold0.02_self_promoter.tsv is generated by selecting subset of enhancer-genes pairs...