Nicolas Chiaruttini
Nicolas Chiaruttini
Hello everybody, We acquired a LLS system recently from Zeiss and a CZI File can go up to a Tb without too much difficulties. (for instance 2 channels, 1024 x...
As descirbed in the title, it would be nice to have access to a method which is called when the user closes the window of an interactive command ( `InteractiveCommand`)...
Hi, First of all Labkit is awesome. Here's my issue : when I segment a big dataset with 4 channels, I export it to a xml/hdf5 format, thus I get...
Hello, This PR is a draft which ultimate goal would be to rewrite the logic of the CZI reader. The goal is to achieve a compatilibility as good as the...
### Checklist - [X] I added a descriptive title - [X] I searched open reports and couldn't find a duplicate ### What happened? I have a yaml file which runs...
Hello! I wrote a script to automate trackmate that uses a SparseLAPTracker and Stardist Trackmate. When running: ``` def writer = new TmXmlWriter(new File(fileTrackMate)) writer.appendModel(model) writer.appendSettings(settings) ``` I get a...
I have a command with a non-required array parameter: ``` @Parameter(label = "Select Bvv Windows to synchronize", required = false) BvvHandle[] bvvhs; ``` Before, when nothing was set, `bvvhs` was...
Hello ! I'm trying to see if I can update some dependencies of abba_python (pyimagej, python version, etc.) but DeepSlice relies on tensorflow 1.15 and this seems to be the...
Hello! Is it possible to train based on a subset of channels only ? The use case I have is the following: * I have the first channel for the...
In the implementation before this PR each time a small ROI is read from an image, a full OIR Pixelblock was read. Combined with the fact that the Optimal Tile...