pynwb

pynwb copied to clipboard

[Feature]: Support `get_class` with arbitrary recursion depth

5

### What would you like to see added to PyNWB? I am running into a problem automatically generating an extension I am creating of the form: ```yaml groups: - neurodata_type:...

bendichter

Update extensions tutorial

1

## Motivation What was the reasoning behind this change? Please explain the changes briefly. ## How to test the behavior? ``` Show how to reproduce the new behavior (can be...

bendichter

[WIP] Add changes to facilitate lookup of SpikeEventSeries from Units table

5

* add link from SpikeEventSeries to UnitSeries * add DEPRECATED to doc for ClusterWaveforms * add link from ElectrodeGroup to SpikeEventSeries * add UnitSeries object to misc, which includes optional...

bendichter

Enh/detect nwb1

4

## Motivation fix #1077 What do we want as an error message here? Something along those lines. Maybe we could point the user to the legacy library, but that didn't...

bendichter

add UnitSeries

7

## Motivation Part of plan to make spike waveforms accessible from Units table. See https://github.com/NeurodataWithoutBorders/nwb-schema/issues/248 ## How to test the behavior? ``` from pynwb.misc import Units, UnitSeries units = Units()...

bendichter

[Bug]: FileNotFoundError when streaming from Dandi archive

1

### What happened? Hello, I was following this [tutorial](https://pynwb.readthedocs.io/en/stable/tutorials/advanced_io/streaming.html#sphx-glr-tutorials-advanced-io-streaming-py.) on streaming NWB and got a `FileNotFoundError:` error when copying the code snippets provided. Thanks for your help and your great...

mayofaulkner

Parallel io from the docs

8

## 1) Bug If you are reporting a bug please provide the following: ### Steps to Reproduce Trying to run the code from the docs for parallel io: https://pynwb.readthedocs.io/en/latest/tutorials/general/advanced_hdf5_io.html?highlight=mpi#parallel-i-o-using-mpi here...

roybens

Allow arbitrary precision for generic numeric types

3

### What would you like to see added to PyNWB? I just got this question from @urut > We're exporting things with matnwb and running through pynwb validator and it...

bendichter

[Bug]: failure to load data with ndx-ecog extension

17

### What happened? When trying to load an nwb file that contains ECOG data, I receive a `ConstructError` originating from a `TypeError: CustomClassGenerator.set_init..__init__: missing argument 'parcellations`. Notably, the file could...

Christonikos

### What happened? The current schema says that these fields should be optional: https://github.com/NeurodataWithoutBorders/nwb-schema/blob/dev/core/nwb.image.yaml#L131 The docval for `OpticalSeries.__init__` says that they are required: https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/src/pynwb/image.py#L321 ### Steps to Reproduce ```python Try...

rly